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Version log

  • Ver 0.9.5 - 4 May 2023
    • Local blastp searching function now also returns the query accession number.
  • Ver 0.9.4 - 19 April 2023
    • A minor bug with -al parameter is fixed.
  • Ver 0.9.3 - 18 April 2023
    • New cmd parameter -pdb for choosing an online blastp database.
    • New cmd parameter -lpdb for using local blastp database.
  • Ver 0.9.2 - 19 February 2023
    • Blastp searching is now available for protein sequences.
  • Ver 0.9.1 - 19 February 2023
    • A major bug of 0.9.0 version in conservation analysis was fixed.
  • Ver 0.9.0 - 17 February 2023
    • Conservation analysis algorithm was updated.
    • -c parameter is now always required.
    • Logs messages were updated.
  • Ver 0.8.7 - 20 January 2023
    • Logs messages were updated.
  • Ver 0.8.6 - 18 January 2023
    • Sequences in MSA plot now are ordered according to their similarity. (--reorder MAFFT parameter)
  • Ver 0.8.5 - 17 January 2023
    • Update for web version
  • Ver 0.8.4 - 30 November 2022
    • Report files were updated.
  • Ver 0.8.3 - 30 November 2022
    • Minor bugs were fixed.
    • Warning messages were updated.
    • NCBI database parsing was optimised.
  • Ver 0.8.2 - 7 November 2022
    • xml files and assemblies annotation bugs were fixed.
    • Annotation parsing was optimised.
  • Ver 0.8.1 - 4 November 2022
    • Large assemblies annotation bug was fixed.
  • Ver 0.8.0 - 2 November 2022
    • New exceptions control.
    • New cmd parameter (-pc).
  • Ver 0.7.0 - 1 November 2022
    • NCBI database parsing was optimised and became ~10 times faster.
  • Ver 0.6.4 - 31 October 2022
    • MAFFT version 7.505 was replaced with v. 7.490 since it's more stable.
  • Ver 0.6.3 - 29 October 2022
    • Entrez.email for the NCBI requests was set.
  • Ver 0.6.2 - 26 October 2022
    • A problem with xml file writing was fixed.
  • Ver 0.6.1 - 25 October 2022
    • ! After the NCBI API update all previous version have a bug with identical protein database parsing. The bug was fixed in this version.
  • Ver 0.6.0 - 23 October 2022
    • New implementation of MSA visualisation
  • Ver 0.5.4 - 13 October 2022
    • Annotation visualisation' bug was fixed
  • Ver 0.5.3 - 12 October 2022
    • Minor bugs with pathes were fixed
  • Ver 0.5.2 - 7 October 2022
    • MSA tool's path bug was fixed.
    • Fast searching now is set as 'auto'.
  • Ver 0.5.1 - 6 October 2022
    • Now compatible with python3.7 (previous versions were compatible only with python3.8+).
  • Ver 0.5.0 - 4 October 2022
    • 'Eukaryotes' and 'Prokaryotes' mode were introduced.
    • MSA now perfomed with MAFT.
    • New cmd and configs parameters were added.
    • Minor bugs were fixed.
  • Ver 0.4.0 - 30 August 2022
    • Visualisation of loci annotation was added.
    • Minor bugs were fixed.
  • Ver 0.3.1 - 17 August 2022
    • New cmd and configs parameters were added.
    • Annotation of uORFs overlapped with the main CDSs was added.
  • Ver 0.3.0 - 7 August 2022
    • Algorithm of conserved ORFs searching was updated.
    • New configs parameteres were added.
  • Ver 0.2.1 - 5 August 2022
    • Annotation parsing bug was fixed.
  • Ver 0.2.0 - 5 August 2022
    • New cmd and configs parameters were added.
    • New classes and methods were developed.
  • Ver 0.1.5 - 31 July 2022
    • MSA visualisation functions updated.
    • Bugs were fixed.
    • New cmd and configs parameters were added.
  • Ver 0.1 - 27 July 2022 - Initial release.